Biblio

Found 79 results
Author Title [ Type(Desc)] Year
Filters: Author is Jaiswal, Pankaj  [Clear All Filters]
Book Chapter
V. Amarasinghe, Dharmawardhana, P. D., and Jaiswal, P., Functional Annotation of Plant Genomes, in Cereal genomics II, P. K. Gupta and Varshney, R. K., Eds. 2013, p. 155.
M. Karey Tello-Ruiz, Stein, J., Wei, S., Youens-Clark, K., Jaiswal, P., and Ware, D., Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways., in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 141-63.
L. Cooper and Jaiswal, P., The Plant Ontology: A Tool for Plant Genomics., in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 89-114.
P. Jaiswal and Usadel, B., Plant Pathway Databases., in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 71-87.
Conference Paper
B. Qu, Kumar, P., Zhang, E., Jaiswal, P., Cooper, L., Elser, J., and Zhang, Y., Interactive Design and Visualization of N-ary Relationships, in SIGGRAPH Asia 2017 Symposium on Visualization, New York, NY, USA, 2017.
Journal Article
S. A. Filichkin, Hamilton, M., Dharmawardhana, P. D., Singh, S. K., Sullivan, C., Ben-Hur, A., Reddy, A. S. N., and Jaiswal, P., Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching., Frontiers in plant science, vol. 9, p. 5, 2018.
L. Harper, Campbell, J., Cannon, E. K. S., Jung, S., Poelchau, M., Walls, R., Andorf, C., Arnaud, E., Berardini, T. Z., Birkett, C., Cannon, S., Carson, J., Condon, B., Cooper, L., Dunn, N., Elsik, C. G., Farmer, A., Ficklin, S. P., Grant, D., Grau, E., Herndon, N., Hu, Z. - L., Humann, J., Jaiswal, P., Jonquet, C., Laporte, M. - A., Larmande, P., Lazo, G., McCarthy, F., Menda, N., Mungall, C. J., Munoz-Torres, M. C., Naithani, S., Nelson, R., Nesdill, D., Park, C., Reecy, J., Reiser, L., Sanderson, L. - A., Sen, T. Z., Staton, M., Subramaniam, S., Tello-Ruiz, M. Karey, Unda, V., Unni, D., Wang, L., Ware, D., Wegrzyn, J., Williams, J., Woodhouse, M., Yu, J., and Main, D., AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture., Database : the journal of biological databases and curation, vol. 2018, 2018.
N. Lingutla, Preece, J., Todorovic, S., Cooper, L., Moore, L., and Jaiswal, P., AISO: Annotation of Image Segments with Ontologies, Journal of Biomedical Semantics, vol. 5, p. 50, 2014.
S. Naithani, Dikeman, D., Garg, P., Al-Bader, N., and Jaiswal, P., Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily., PeerJ, vol. 9, p. e11052, 2021.
Y. Yamazaki and Jaiswal, P., Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase., Plant & cell physiology, vol. 46, pp. 63-8, 2005.
P. Gupta, Geniza, M., Naithani, S., Phillips, J. L., Haq, E., and Jaiswal, P., Chia () Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development., Front Plant Sci, vol. 12, p. 667678, 2021.
S. Schaeffer, Harper, A., Raja, R., Jaiswal, P., and Dhingra, A., Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes., PloS one, vol. 9, p. e112870, 2014.
P. Vangay, Burgin, J., Johnston, A., Beck, K. L., Berrios, D. C., Blumberg, K., Canon, S., Chain, P., Chandonia, J. - M., Christianson, D., Costes, S. V., Damerow, J., Duncan, W. D., Dundore-Arias, J. Pablo, Fagnan, K., Galazka, J. M., Gibbons, S. M., Hays, D., Hervey, J., Hu, B., Hurwitz, B. L., Jaiswal, P., Joachimiak, M. P., Kinkel, L., Ladau, J., Martin, S. L., McCue, L. Ann, Miller, K., Mouncey, N., Mungall, C., Pafilis, E., Reddy, T. B. K., Richardson, L., Roux, S., Schriml, L. M., Shaffer, J. P., Sundaramurthi, J. Chandrabos, Thompson, L. R., Timme, R. E., Zheng, J., Wood-Charlson, E. M., and Eloe-Fadrosh, E. A., Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities"., mSystems, vol. 6, no. 3, 2021.
C. Warman, Sullivan, C. M., Preece, J., Buchanan, M. E., Vejlupkova, Z., Jaiswal, P., and Fowler, J. E., A cost-effective maize ear phenotyping platform enables rapid categorization and quantification of kernels., Plant J, vol. 106, no. 2, pp. 566-579, 2021.
P. Garg and Jaiswal, P., Databases and bioinformatics tools for rice research, Current Plant Biology, vol. 7-8, pp. 39 - 52, 2016.
S. E. Fox, Geniza, M., Hanumappa, M., Naithani, S., Sullivan, C. M., Preece, J., Tiwari, V. I. K., Elser, J., Leonard, J. M., Sage, A., Gresham, C., Kerhornou, A., Bolser, D., McCarthy, F., Kersey, P., Lazo, G. R., and Jaiswal, P., De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum., PLoS ONE, vol. 9, 2014.
A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides., G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.
A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides., G3 (Bethesda, Md.), 2016.
A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides., G3 (Bethesda, Md.), 2016.
L. K. Padgitt-Cobb, Kingan, S. B., Wells, J., Elser, J., Kronmiller, B., Moore, D., Concepcion, G., Peluso, P., Rank, D., Jaiswal, P., Henning, J., and Hendrix, D. A., A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome., Plant Genome, vol. 14, no. 1, p. e20072, 2021.
Y. Gao, Liu, X., Jin, Y., Wu, J., Li, S., Li, Y., Chen, B., Zhang, Y., Wei, L., Li, W., Li, R., Lin, C., Reddy, A. S. N., Jaiswal, P., and Gu, L., Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of Populus trichocarpa., Plant Physiol, vol. 190, no. 1, pp. 459-479, 2022.
A. E. Thessen, Bunker, D. E., Buttigieg, P. Luigi, Cooper, L. D., Dahdul, W. M., Domisch, S., Franz, N. M., Jaiswal, P., Lawrence-Dill, C. J., Midford, P. E., Mungall, C. J., Ramírez, M. J., Specht, C. D., Vogt, L., Vos, R. Aldo, Walls, R. L., White, J. W., Zhang, G., Deans, A. R., Huala, E., Lewis, S. E., and Mabee, P. M., Emerging semantics to link phenotype and environment., PeerJ, vol. 3, p. e1470, 2015.
K. L. Howe, Contreras-Moreira, B., De Silva, N., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, A., Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, K. E., Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Wei, S., Ware, D., Williams, G., Yates, A. D., and Flicek, P., Ensembl Genomes 2020-enabling non-vertebrate genomic research., Nucleic acids research, 2019.
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis., Molecular plant, vol. 8, pp. 207-27, 2015.
I. Papatheodorou, Fonseca, N. A., Keays, M., Y Tang, A., Barrera, E., Bazant, W., Burke, M., Füllgrabe, A., Fuentes, A. Muñoz- Pom, George, N., Huerta, L., Koskinen, S., Mohammed, S., Geniza, M., Preece, J., Jaiswal, P., Jarnuczak, A. F., Huber, W., Stegle, O., Vizcaino, J. Antonio, Brazma, A., and Petryszak, R., Expression Atlas: gene and protein expression across multiple studies and organisms., Nucleic acids research, vol. 46, pp. D246-D251, 2018.