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Found 12 results
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Computational Biology
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2018
S. Naithani
,
Preece, J.
,
D’Eustachio, P.
,
Gupta, P.
,
Amarasinghe, V.
,
Dharmawardhana, P. D.
,
Wu, G.
,
Fabregat, A.
,
Elser, J. L.
,
Weiser, J.
,
Keays, M.
,
Fuentes, A. Munoz- Pome
,
Petryszak, R.
,
Stein, L. D.
,
Ware, D.
, and
Jaiswal, P.
,
“
Plant Reactome: a resource for plant pathways and comparative analysis.
”
,
Nucleic acids research
, vol. 45, pp. D1029-D1039, 2018.
2017
S. Naithani
and
Jaiswal, P.
,
“
Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.
”
,
Methods in molecular biology (Clifton, N.J.)
, vol. 1533, pp. 241-256, 2017.
S. Naithani
,
Geniza, M.
, and
Jaiswal, P.
,
“
Variant Effect Prediction Analysis Using Resources Available at Gramene Database.
”
,
Methods in molecular biology (Clifton, N.J.)
, vol. 1533, pp. 279-297, 2017.
2016
A. C Quandt
,
Di, Y.
,
Elser, J.
,
Jaiswal, P.
, and
Spatafora, J. W.
,
“
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.
”
,
G3 (Bethesda, Md.)
, vol. 6, pp. 731-41, 2016.
2015
J. J. Loor
,
Vailati-Riboni, M.
,
McCann, J. C.
,
Zhou, Z.
, and
Bionaz, M.
,
“
TRIENNIAL LACTATION SYMPOSIUM: Nutrigenomics in livestock: Systems biology meets nutrition.
”
,
J Anim Sci
, vol. 93, no. 12, pp. 5554-74, 2015.
2014
L. Truong
,
Reif, D. M.
,
St Mary, L.
,
Geier, M. C.
,
Truong, H. D.
, and
Tanguay, R. L.
,
“
Multidimensional in vivo hazard assessment using zebrafish.
”
,
Toxicol Sci
, vol. 137, no. 1, pp. 212-33, 2014.
2013
T. M. Grala
,
Kay, J. K.
,
Phyn, C. V. C.
,
Bionaz, M.
,
Walker, C. G.
,
Rius, A. G.
,
Snell, R. G.
, and
Roche, J. R.
,
“
Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle.
”
,
Physiol Genomics
, vol. 45, no. 23, pp. 1157-67, 2013.
2012
S. C. Tilton
,
Tal, T. L.
,
Scroggins, S. M.
,
Franzosa, J. A.
,
Peterson, E. S.
,
Tanguay, R. L.
, and
Waters, K. M.
,
“
Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.
”
,
BMC Bioinformatics
, vol. 13, p. 311, 2012.
2010
P. Piantoni
,
Bionaz, M.
,
Graugnard, D. E.
,
Daniels, K. M.
,
Everts, R. E.
,
Rodriguez-Zas, S. L.
,
Lewin, H. A.
,
Hurley, H. L.
,
Akers, M.
, and
Loor, J. J.
,
“
Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.
”
,
BMC Genomics
, vol. 11, p. 331, 2010.
“
The Gene Ontology in 2010: extensions and refinements.
”
,
Nucleic acids research
, vol. 38, pp. D331-5, 2010.
2009
K. M. Moyes
,
Drackley, J. K.
,
Morin, D. E.
,
Bionaz, M.
,
Rodriguez-Zas, S. L.
,
Everts, R. E.
,
Lewin, H. A.
, and
Loor, J. J.
,
“
Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling..
”
,
BMC Genomics
, vol. 10, p. 542, 2009.
2002
D. H. Ware
,
Jaiswal, P.
,
Ni, J.
,
Yap, I. V.
,
Pan, X.
,
Clark, K. Y.
,
Teytelman, L.
,
Schmidt, S. C.
,
Zhao, W.
,
Chang, K.
,
Cartinhour, S.
,
Stein, L. D.
, and
McCouch, S. R.
,
“
Gramene, a tool for grass genomics.
”
,
Plant physiology
, vol. 130, pp. 1606-13, 2002.